International Journal of Biological Sciences

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Volume 14 (8); 2018

Editorial

Special issue on Computational Resources and Methods in Biological Sciences
Hao Lin, Shaoliang Peng, Jian Huang
Int. J. Biol. Sci. 2018; 14(8): 807-810. doi:10.7150/ijbs.27554
[Abstract] [Full text] [PDF] [PubMed] [PMC]

Research Papers

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Integrated multifactor analysis explores core dysfunctional modules in autism spectrum disorder
Yan Huang, Zhenghong Chang, Xiaodan Li, Shuang Liang, Ying Yi, Lijie Wu
Int. J. Biol. Sci. 2018; 14(8): 811-818. doi:10.7150/ijbs.24624
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Genome-wide Analyses on Single Disease Samples for Potential Biomarkers and Biological Features of Molecular Subtypes: A Case Study in Gastric Cancer
Wei Zeng, Nini Rao, Qian Li, Guangbin Wang, Dingyun Liu, Zhengwen Li, Yuntao Yang
Int. J. Biol. Sci. 2018; 14(8): 833-842. doi:10.7150/ijbs.24816
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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GeneFuse: detection and visualization of target gene fusions from DNA sequencing data
Shifu Chen, Ming Liu, Tanxiao Huang, Wenting Liao, Mingyan Xu, Jia Gu
Int. J. Biol. Sci. 2018; 14(8): 843-848. doi:10.7150/ijbs.24626
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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PRWHMDA: Human Microbe-Disease Association Prediction by Random Walk on the Heterogeneous Network with PSO
Chuanyan Wu, Rui Gao, Daoliang Zhang, Shiyun Han, Yusen Zhang
Int. J. Biol. Sci. 2018; 14(8): 849-857. doi:10.7150/ijbs.24539
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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CRISPRMatch: An Automatic Calculation and Visualization Tool for High-throughput CRISPR Genome-editing Data Analysis
Qi You, Zhaohui Zhong, Qiurong Ren, Fakhrul Hassan, Yong Zhang, Tao Zhang
Int. J. Biol. Sci. 2018; 14(8): 858-862. doi:10.7150/ijbs.24581
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Identification of Inhibitors of MMPS Enzymes via a Novel Computational Approach
Jian Song, Jijun Tang, Fei Guo
Int. J. Biol. Sci. 2018; 14(8): 863-871. doi:10.7150/ijbs.24588
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Research on folding diversity in statistical learning methods for RNA secondary structure prediction
Yu Zhu, ZhaoYang Xie, YiZhou Li, Min Zhu, Yi-Ping Phoebe Chen
Int. J. Biol. Sci. 2018; 14(8): 872-882. doi:10.7150/ijbs.24595
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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iRSpot-Pse6NC: Identifying recombination spots in Saccharomyces cerevisiae by incorporating hexamer composition into general PseKNC
Hui Yang, Wang-Ren Qiu, Guoqing Liu, Feng-Biao Guo, Wei Chen, Kuo-Chen Chou, Hao Lin
Int. J. Biol. Sci. 2018; 14(8): 883-891. doi:10.7150/ijbs.24616
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Identifying differentially expressed genes from cross-site integrated data based on relative expression orderings
Hao Cai, Xiangyu Li, Jing Li, Qirui Liang, Weicheng Zheng, Qingzhou Guan, Zheng Guo, Xianlong Wang
Int. J. Biol. Sci. 2018; 14(8): 892-900. doi:10.7150/ijbs.24548
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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A Sequential Segment Based Alpha-Helical Transmembrane Protein Alignment Method
Han Wang, Jingru Wang, Li Zhang, Pingping Sun, Ning Du, Yanwen Li
Int. J. Biol. Sci. 2018; 14(8): 901-906. doi:10.7150/ijbs.24327
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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MicroShare: Privacy-Preserved Medical Resource Sharing through MicroService Architecture
Yilong Yang, Quan Zu, Peng Liu, Defang Ouyang, Xiaoshan Li
Int. J. Biol. Sci. 2018; 14(8): 907-919. doi:10.7150/ijbs.24617
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Computational Design of Antiangiogenic Peptibody by Fusing Human IgG1 Fc Fragment and HRH Peptide: Structural Modeling, Energetic Analysis, and Dynamics Simulation of Its Binding Potency to VEGF Receptor
Lin Ning, Zhongyan Li, Zhengya Bai, Shasha Hou, Bifang He, Jian Huang, Peng Zhou
Int. J. Biol. Sci. 2018; 14(8): 930-937. doi:10.7150/ijbs.24582
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Classification of Sputum Sounds Using Artificial Neural Network and Wavelet Transform
Yan Shi, Guoliang Wang, Jinglong Niu, Qimin Zhang, Maolin Cai, Baoqing Sun, Dandan Wang, Mei Xue, Xiaohua Douglas Zhang
Int. J. Biol. Sci. 2018; 14(8): 938-945. doi:10.7150/ijbs.23855
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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PTM-ssMP: A Web Server for Predicting Different Types of Post-translational Modification Sites Using Novel Site-specific Modification Profile
Yu Liu, Minghui Wang, Jianing Xi, Fenglin Luo, Ao Li
Int. J. Biol. Sci. 2018; 14(8): 946-956. doi:10.7150/ijbs.24121
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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HBPred: a tool to identify growth hormone-binding proteins
Hua Tang, Ya-Wei Zhao, Ping Zou, Chun-Mei Zhang, Rong Chen, Po Huang, Hao Lin
Int. J. Biol. Sci. 2018; 14(8): 957-964. doi:10.7150/ijbs.24174
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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RicyerDB: A Database For Collecting Rice Yield-related Genes with Biological Analysis
Jing Jiang, Fei Xing, Xiangxiang Zeng, Quan Zou
Int. J. Biol. Sci. 2018; 14(8): 965-970. doi:10.7150/ijbs.23328
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Predicting Potential Drugs for Breast Cancer based on miRNA and Tissue Specificity
Liang Yu, Jin Zhao, Lin Gao
Int. J. Biol. Sci. 2018; 14(8): 971-982. doi:10.7150/ijbs.23350
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Improving Prediction of Self-interacting Proteins Using Stacked Sparse Auto-Encoder with PSSM profiles
Yan-Bin Wang, Zhu-Hong You, Li-Ping Li, De-Shuang Huang, Feng-Feng Zhou, Shan Yang
Int. J. Biol. Sci. 2018; 14(8): 983-991. doi:10.7150/ijbs.23817
[Abstract] [Full text] [PDF] [PubMed] [PMC]

Reviews

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A comprehensive review of web-based resources of non-coding RNAs for plant science research
Peiran Liao, Shipeng Li, Xiuming Cui, Yun Zheng
Int. J. Biol. Sci. 2018; 14(8): 819-832. doi:10.7150/ijbs.24593
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Translational Bioinformatics for Cholangiocarcinoma: Opportunities and Challenges
Fuliang Qian, Junping Guo, Zhi Jiang, Bairong Shen
Int. J. Biol. Sci. 2018; 14(8): 920-929. doi:10.7150/ijbs.24622
[Abstract] [Full text] [PDF] [PubMed] [PMC]